This book serves as a manual and reference for inferring phylogenies. It includes relevant algorithms to encourage programming and tutorials for existing programs. It is intended for students and practicing scientists.


Noted contributors


  1. Introduction  
  2. Alignment Preparation  
  3. Trees, heuristics, and more  
  4. Parsimony Reconstruction  
  5. Distance Method Reconstruction  
  6. Likelihood Reconstruction  
  7. Bayesian Reconstruction  


  1. Math Primer  
  2. Programs  

Note to Editors

Any editors are welcome, but try to use the development page before doing so.